| Echinobotryum
 | atrum
 | See Cephalotrichum stemonitis
 | 
| Eladia
 | saccula
 |  | 
| Elaphocordyceps
 | subsessilis
 |  | 
| Embellisia
 | chlamydospora
 |  | 
| Emericellopsis
 | alkalina
 |  | 
|  | donezkii |  | 
|  | glabra |  | 
|  | humicola |  | 
|  | maritima |  | 
|  | microspora
 | See Emericellopsis minima
 | 
|  | minima |  | 
|  | pallida |  | 
|  | pusilla
 | See Emericellopsis minima
 | 
|  | robusta |  | 
|  | salmosynnemata
 | See Emericellopsis minima
 | 
|  | terricola |  | 
| Endomyces
 | decipiens
 | See Dipodascus armillariae
 | 
| Endomyces
 | geotrichum
 | See Galactomyces geotrichum
 | 
| Endomyces
 | magnusii
 | See Magnusiomyces magnusii
 | 
| Endomyces
 | reessii
 | See Galactomyces reessii
 | 
| Endothia
 | parasitica
 | See Cryphonectria parasitica
 | 
| Engyodontium
 | album
 |  | 
| Entomophthora
 | conica
 |  | 
|  | coronata
 | See Conidiobolus coronatus
 | 
|  | pyriformis |  | 
|  | thaxteriana |  | 
|  | virulenta
 | See Conidiobolus thromboides
 | 
| Ephemeroascus
 | verticillatus
 | See Coniochaeta verticillata
 | 
| Epicoccum
 | nigrum
 |  | 
|  | purpurascens
 | See Epicoccum nigrum
 | 
| Epithyrium
 | obscurum
 |  | 
| Eremascus
 | fertilis
 |  | 
| Eremothecium
 | ashbyi
 |  | 
|  | gossypii |  | 
| Erynia
 | conica
 | See Entomophthora conica
 | 
| Eupenicillium
 | anatolicum
 | See Penicillium anatolicum
 | 
| Eupenicillium
 | ehrlichii
 | See Penicillium ehrlichii
 | 
| Eupenicillium
 | pinetorum
 | See Penicillium fuscum
 | 
| Eurotium
 | chevalieri
 | See Aspergillus chevalieri
 | 
| Eurotium
 | tonophilum
 | See Aspergillus tonophilus
 | 
| Evlachovaea
 | kintrischica
 |  | 
| Exobasidium
 | myrtilli
 |  | 
|  | vaccinii |  | 
|  | warmingii
 | See Arcticomyces warmingii
 | 
| Exophiala
 | castellanii
 |  | 
|  | heteromorpha |  | 
|  | jeanselmei var. heteromorpha
 | See Exophiala heteromorpha
 | 
|  | jeanselmei var. lecanii-corni
 | See Exophiala lecanii-corni
 | 
|  | lecanii-corni |  | 
|  | mansonii
 | See Exophiala castellanii
 | 
|  | moniliae |  | 
|  | nigra |  | 
|  | salmonis |  | 
|  | xenobiotica |  | 
| Exserohilum
 | pedicellatum
 |  |